STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL92606.1Polyhydroxybutyrate depolymerase. (267 aa)    
Predicted Functional Partners:
SDL92554.1
Zinc/manganese transport system ATP-binding protein.
       0.828
SDL92585.1
Zinc/manganese transport system permease protein.
       0.828
SDL92514.1
Zinc/manganese transport system substrate-binding protein.
       0.816
SDL92499.1
DNA-binding transcriptional regulator, LacI/PurR family.
       0.664
SDL97542.1
S-formylglutathione hydrolase FrmB.
   
   0.534
SDL67266.1
Helix-turn-helix domain-containing protein.
  
     0.446
SDL70575.1
Methyltransferase domain-containing protein.
 
     0.444
SDL99175.1
tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase.
     
 0.415
SDL65566.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Corynebacterium mycetoides
NCBI taxonomy Id: 38302
Other names: ATCC 43995, C. mycetoides, CCUG 27538, CIP 55.51, DSM 20632, IFO 15289, JCM 9388, NBRC 15289, NCTC 9864
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.