STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000720375_04247Unannotated protein. (446 aa)    
Predicted Functional Partners:
GCA_000720375_07784
Unannotated protein.
    
   0.770
GCA_000720375_04246
Unannotated protein.
       0.767
GCA_000720375_07171
Unannotated protein.
   
 0.684
GCA_000720375_08610
Unannotated protein.
   
 0.684
GCA_000720375_08122
Unannotated protein.
  
  
 0.643
GCA_000720375_06149
Unannotated protein.
   
 
 0.640
Rrhod_3257
Unannotated protein; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
    
 0.636
GCA_000720375_01310
Unannotated protein.
  
     0.635
GCA_000720375_06057
Unannotated protein.
    
 0.634
rplJ
Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
   
  0.625
Your Current Organism:
Rhodococcus rhodnii
NCBI taxonomy Id: 38312
Other names: ATCC 35071, CIP 104181, DSM 43336, IEGM 555, JCM 3203, KCC A-0203, LMG 5363, LMG:5363, NBRC 100604, NCIB 11279, NCIB:11279, NCIMB 11279, NRRL B-16535, Nocardia rhodnii, R. rhodnii, strain N445
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.