Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000720375_00093 | GCA_000720375_04647 | GCA_000720375_00093 | GCA_000720375_04647 | Unannotated protein. | Unannotated protein. | 0.912 |
GCA_000720375_00093 | GCA_000720375_08881 | GCA_000720375_00093 | GCA_000720375_08881 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_000720375_00093 | GCA_000720375_08944 | GCA_000720375_00093 | GCA_000720375_08944 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_000720375_00093 | rplT | GCA_000720375_00093 | GCA_000720375_00092 | Unannotated protein. | Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
GCA_000720375_00093 | rplU | GCA_000720375_00093 | GCA_000720375_08501 | Unannotated protein. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
GCA_000720375_00093 | rpmC | GCA_000720375_00093 | GCA_000720375_08889 | Unannotated protein. | Unannotated protein; Belongs to the universal ribosomal protein uL29 family. | 0.999 |
GCA_000720375_00093 | rpsC | GCA_000720375_00093 | GCA_000720375_08887 | Unannotated protein. | Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
GCA_000720375_00093 | rpsG | GCA_000720375_00093 | GCA_000720375_08877 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
GCA_000720375_00093 | rpsK | GCA_000720375_00093 | GCA_000720375_08913 | Unannotated protein. | Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
GCA_000720375_00093 | rpsO | GCA_000720375_00093 | GCA_000720375_02557 | Unannotated protein. | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
GCA_000720375_04647 | GCA_000720375_00093 | GCA_000720375_04647 | GCA_000720375_00093 | Unannotated protein. | Unannotated protein. | 0.912 |
GCA_000720375_04647 | GCA_000720375_08881 | GCA_000720375_04647 | GCA_000720375_08881 | Unannotated protein. | Unannotated protein. | 0.913 |
GCA_000720375_04647 | GCA_000720375_08944 | GCA_000720375_04647 | GCA_000720375_08944 | Unannotated protein. | Unannotated protein. | 0.914 |
GCA_000720375_04647 | rplT | GCA_000720375_04647 | GCA_000720375_00092 | Unannotated protein. | Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.910 |
GCA_000720375_04647 | rplU | GCA_000720375_04647 | GCA_000720375_08501 | Unannotated protein. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.914 |
GCA_000720375_04647 | rpmC | GCA_000720375_04647 | GCA_000720375_08889 | Unannotated protein. | Unannotated protein; Belongs to the universal ribosomal protein uL29 family. | 0.923 |
GCA_000720375_04647 | rpsC | GCA_000720375_04647 | GCA_000720375_08887 | Unannotated protein. | Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.913 |
GCA_000720375_04647 | rpsG | GCA_000720375_04647 | GCA_000720375_08877 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.911 |
GCA_000720375_04647 | rpsK | GCA_000720375_04647 | GCA_000720375_08913 | Unannotated protein. | Unannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.911 |
GCA_000720375_04647 | rpsO | GCA_000720375_04647 | GCA_000720375_02557 | Unannotated protein. | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.914 |
page 1 of 6