STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000720375_09093Unannotated protein. (250 aa)    
Predicted Functional Partners:
GCA_000720375_09094
Unannotated protein.
 
     0.821
GCA_000720375_00213
Unannotated protein.
  
  0.552
GCA_000720375_08735
Unannotated protein.
  
  0.545
GCA_000720375_09095
Unannotated protein.
  
    0.545
atpD
Unannotated protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.542
GCA_000720375_09096
Unannotated protein.
       0.542
GCA_000720375_08165
Unannotated protein.
    
   0.538
GCA_000720375_08737
Unannotated protein.
  
  0.538
GCA_000720375_05978
Unannotated protein.
  
  0.532
GCA_000720375_00057
Unannotated protein.
     
 0.480
Your Current Organism:
Rhodococcus rhodnii
NCBI taxonomy Id: 38312
Other names: ATCC 35071, CIP 104181, DSM 43336, IEGM 555, JCM 3203, KCC A-0203, LMG 5363, LMG:5363, NBRC 100604, NCIB 11279, NCIB:11279, NCIMB 11279, NRRL B-16535, Nocardia rhodnii, R. rhodnii, strain N445
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.