STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0036PFAM: VanW family protein; KEGG: rrs:RoseRS_0768 VanW family protein. (636 aa)    
Predicted Functional Partners:
Rcas_0369
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: rrs:RoseRS_0131 cell envelope-related transcriptional attenuator.
 
     0.697
Rcas_0015
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: rrs:RoseRS_4519 cell envelope-related transcriptional attenuator.
 
     0.664
Rcas_0287
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: rrs:RoseRS_0249 cell envelope-related transcriptional attenuator.
 
     0.655
Rcas_1996
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: rrs:RoseRS_1714 cell envelope-related transcriptional attenuator.
 
     0.651
Rcas_0035
KEGG: rrs:RoseRS_0771 hypothetical protein.
       0.581
Rcas_2290
KEGG: rrs:RoseRS_1532 PT repeat-containing protein.
  
     0.563
Rcas_0037
PFAM: DNA repair protein RadC; KEGG: rrs:RoseRS_0767 DNA repair protein RadC; Belongs to the UPF0758 family.
       0.532
Rcas_2113
KEGG: rrs:RoseRS_3047 hypothetical protein.
  
     0.530
Rcas_2959
PFAM: peptidase C60 sortase A and B; KEGG: rrs:RoseRS_3119 peptidase C60, sortase A and B.
  
     0.530
Rcas_0038
PFAM: peptidase M23B; KEGG: rrs:RoseRS_4626 peptidase M23B.
 
    0.496
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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