STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0078PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_4536 methyltransferase type 11. (273 aa)    
Predicted Functional Partners:
Rcas_3605
PFAM: NodS family protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_0962 methyltransferase type 12.
  
   0.727
leuS
TIGRFAM: leucyl-tRNA synthetase; KEGG: rrs:RoseRS_4535 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   0.658
Rcas_0080
KEGG: jan:Jann_4252 hypothetical protein.
       0.559
Rcas_0079
Hypothetical protein.
       0.550
Rcas_4176
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: btl:BALH_2563 methyltransferase.
 
  
 0.540
Rcas_4287
PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: rrs:RoseRS_3600 fibronectin-binding A domain protein.
  
 
   0.525
Rcas_3684
PFAM: Nucleotidyl transferase; KEGG: rrs:RoseRS_1246 nucleotidyl transferase.
 
    0.467
Rcas_3192
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: rrs:RoseRS_3075 DNA polymerase III, delta subunit.
 
     0.447
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.