STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0081KEGG: syn:sll1400 hypothetical protein. (111 aa)    
Predicted Functional Partners:
Rcas_0082
PFAM: protein of unknown function DUF433; KEGG: ava:Ava_1741 protein of unknown function DUF433.
 
   
 0.950
Rcas_0712
PFAM: protein of unknown function DUF433; KEGG: ana:asr2172 hypothetical protein.
 
   
 0.772
Rcas_2776
PFAM: protein of unknown function DUF433; KEGG: sus:Acid_6200 protein of unknown function DUF433.
 
   
 0.756
Rcas_0538
PFAM: protein of unknown function DUF433; KEGG: rrs:RoseRS_0896 protein of unknown function DUF433.
 
   
 0.740
Rcas_0083
KEGG: rrs:RoseRS_4537 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase.
       0.473
Rcas_1636
PFAM: protein of unknown function DUF433; KEGG: rrs:RoseRS_2492 protein of unknown function DUF433.
 
   
 0.464
Rcas_2886
PFAM: protein of unknown function DUF820; KEGG: rba:RB8456 hypothetical protein.
  
     0.436
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.