STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0102PFAM: protein of unknown function DUF952; KEGG: rrs:RoseRS_4550 protein of unknown function DUF952. (115 aa)    
Predicted Functional Partners:
Rcas_0103
PFAM: carbohydrate kinase FGGY; KEGG: rrs:RoseRS_4551 carbohydrate kinase, FGGY.
       0.773
Rcas_0101
PFAM: iron dependent repressor; FeoA family protein; KEGG: rrs:RoseRS_4549 iron dependent repressor.
       0.693
Rcas_0104
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rrs:RoseRS_4552 short-chain dehydrogenase/reductase SDR.
       0.495
Rcas_0506
KEGG: rrs:RoseRS_3630 hypothetical protein.
  
     0.464
Rcas_0105
PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_4553 alpha/beta hydrolase fold.
       0.437
Rcas_2197
TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; Cna B domain protein; KEGG: rrs:RoseRS_1068 conserved repeat domain.
  
     0.430
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.