STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0108KEGG: rrs:RoseRS_4555 hypothetical protein. (123 aa)    
Predicted Functional Partners:
Rcas_1617
PFAM: Shikimate/quinate 5-dehydrogenase; KEGG: rrs:RoseRS_1330 shikimate/quinate 5-dehydrogenase.
   
 
 0.846
Rcas_2362
KEGG: rrs:RoseRS_2483 dehydrogenase-like protein.
   
 
 0.846
Rcas_2436
KEGG: rrs:RoseRS_2861 hypothetical protein.
   
 
 0.784
Rcas_1705
PFAM: aldo/keto reductase; KEGG: rrs:RoseRS_1410 aldo/keto reductase.
   
   0.613
Rcas_0811
TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: rrs:RoseRS_4459 iron-sulfur cluster binding protein.
   
   0.555
Rcas_3664
KEGG: rrs:RoseRS_4046 hypothetical protein.
  
  
 0.551
Rcas_0110
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_4562 ABC transporter related.
  
  
 0.512
Rcas_4052
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rrs:RoseRS_1213 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
  
 0.486
msrB
TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: rrs:RoseRS_2424 methionine-R-sulfoxide reductase.
     
 0.448
Rcas_0109
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4556 binding-protein-dependent transport systems inner membrane component.
       0.445
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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