STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0127PFAM: protein of unknown function DUF1037; KEGG: rrs:RoseRS_4342 protein of unknown function DUF1037. (253 aa)    
Predicted Functional Partners:
Rcas_4405
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: rrs:RoseRS_3454 oxidoreductase domain protein.
 
    0.769
Rcas_0395
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rrs:RoseRS_0136 xylose isomerase domain protein TIM barrel.
 
    0.768
Rcas_0747
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rrs:RoseRS_4404 xylose isomerase domain protein TIM barrel.
 
    0.744
Rcas_4406
KEGG: rrs:RoseRS_3453 hypothetical protein.
 
     0.691
Rcas_1870
Glycosyltransferase 36; PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: rrs:RoseRS_2737 glycosyltransferase 36.
   
    0.685
Rcas_0128
KEGG: rrs:RoseRS_0604 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.671
Rcas_3572
Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_1365 oxidoreductase domain protein.
 
    0.625
Rcas_2296
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rrs:RoseRS_1537 xylose isomerase domain protein TIM barrel.
 
    0.590
Rcas_0478
PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_4248 extracellular solute-binding protein, family 1.
 
     0.572
Rcas_2200
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aau:AAur_0524 putative sugar phosphate isomerase/epimerase.
 
    0.555
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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