STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0145Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Kelch repeat-containing protein; Bacterio-opsin activator HTH domain protein; sigma-70 region 4 domain protein; Kelch repeat protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_0474 response regulator receiver protein. (454 aa)    
Predicted Functional Partners:
Rcas_1113
KEGG: rrs:RoseRS_3771 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.854
Rcas_3064
PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rrs:RoseRS_2414 GAF sensor signal transduction histidine kinase.
 
 
 0.844
Rcas_0284
Multi-sensor signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rrs:RoseRS_0252 multi-sensor signal transduction histidine kinase.
 
 
 0.842
Rcas_3261
Multi-sensor signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rrs:RoseRS_1983 multi-sensor signal transduction histidine kinase.
 
 
 0.824
Rcas_1580
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rrs:RoseRS_0939 histidine kinase.
 
   0.789
Rcas_1356
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rrs:RoseRS_4276 histidine kinase.
 
   0.788
Rcas_4226
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: two-component sensor, putative.
 
 
 0.785
Rcas_3762
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rrs:RoseRS_3277 histidine kinase.
 
   0.781
Rcas_1122
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rrs:RoseRS_3762 histidine kinase.
 
   0.776
Rcas_0732
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rrs:RoseRS_4390 putative signal transduction histidine kinase.
 
   0.770
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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