STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0177KEGG: rrs:RoseRS_4580 hypothetical protein. (148 aa)    
Predicted Functional Partners:
Rcas_0596
SMART: Pyrrolo-quinoline quinone; KEGG: rrs:RoseRS_4243 nucleic acid binding, OB-fold, tRNA/helicase-type.
  
     0.743
Rcas_0470
KEGG: rrs:RoseRS_4242 hypothetical protein.
  
     0.726
Rcas_3299
TIGRFAM: CRISPR-associated autoregulator DevR family; CRISPR-associated regulatory protein, DevR family; KEGG: rrs:RoseRS_1866 CRISPR-associated autoregulator, DevR family.
  
     0.718
Rcas_3968
KEGG: rrs:RoseRS_1128 hypothetical protein.
  
     0.706
Rcas_0465
PFAM: O-antigen polymerase; KEGG: rrs:RoseRS_4235 O-antigen polymerase.
  
     0.661
Rcas_0555
PFAM: Laminin G sub domain 2; SMART: LamG domain protein jellyroll fold domain protein; KEGG: rrs:RoseRS_3863 laminin G, sub domain 2.
  
     0.648
Rcas_0176
KEGG: rrs:RoseRS_4581 hypothetical protein.
       0.609
Rcas_3963
KEGG: rrs:RoseRS_1123 LamG domain protein jellyroll fold domain protein.
  
     0.600
Rcas_3964
KEGG: rrs:RoseRS_1124 LamG domain protein jellyroll fold domain protein.
  
     0.599
Rcas_3301
KEGG: rrs:RoseRS_1868 CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases.
  
     0.555
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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