STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0179PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rrs:RoseRS_0088 amine oxidase. (448 aa)    
Predicted Functional Partners:
Rcas_0178
PFAM: conserved hypothetical protein; KEGG: rrs:RoseRS_0089 conserved hypothetical protein 374.
 
    0.929
Rcas_0531
KEGG: rrs:RoseRS_0660 uncharacterized membrane protein-like protein.
 
    0.869
Rcas_0532
Tetratricopeptide TPR_4; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0659 tetratricopeptide TPR_2 repeat protein.
 
    0.859
Rcas_0180
KEGG: rrs:RoseRS_0087 hypothetical protein.
       0.773
Rcas_0626
PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: rrs:RoseRS_0866 uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
 
  
 0.764
Rcas_0292
PFAM: glycosyl transferase family 39; KEGG: rrs:RoseRS_0243 glycosyl transferase, family 39.
 
     0.760
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
  
 0.715
Rcas_0293
PFAM: NHL repeat containing protein; KEGG: rrs:RoseRS_0242 NHL repeat containing protein.
 
     0.640
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
  
 0.638
hemH-2
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
  
 0.638
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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