STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0204Glutamine--scyllo-inositol transaminase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rrs:RoseRS_3868 glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family. (385 aa)    
Predicted Functional Partners:
Rcas_3971
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: rrs:RoseRS_1131 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.853
Rcas_1348
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_4265 glycosyl transferase, family 2.
  
  
 0.842
Rcas_0203
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rrs:RoseRS_3869 NAD-dependent epimerase/dehydratase.
  
 0.839
Rcas_0785
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_4431 oxidoreductase domain protein.
    0.825
Rcas_1030
PFAM: sugar transferase; KEGG: rrs:RoseRS_0402 sugar transferase.
  
  
 0.810
Rcas_1950
PFAM: sugar transferase; KEGG: rrs:RoseRS_2948 undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.810
Rcas_3974
PFAM: sugar transferase; KEGG: rrs:RoseRS_1134 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.809
Rcas_4266
PFAM: sugar transferase; KEGG: rrs:RoseRS_3578 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.809
Rcas_3975
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_1135 oxidoreductase domain protein.
    0.774
Rcas_3431
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rrs:RoseRS_1611 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.663
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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