STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0224KEGG: rrs:RoseRS_0607 hypothetical protein. (163 aa)    
Predicted Functional Partners:
Rcas_3865
KEGG: rrs:RoseRS_4300 hypothetical protein.
 
 
 0.828
Rcas_0293
PFAM: NHL repeat containing protein; KEGG: rrs:RoseRS_0242 NHL repeat containing protein.
 
 
 0.822
Rcas_2445
Hypothetical protein.
  
 
 0.807
msrB
TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: rrs:RoseRS_2424 methionine-R-sulfoxide reductase.
     
 0.493
Rcas_0226
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
       0.490
Rcas_0225
KEGG: rrs:RoseRS_0608 hypothetical protein.
  
    0.466
Rcas_0485
PFAM: protein of unknown function DUF218; KEGG: rrs:RoseRS_3653 protein of unknown function DUF218.
  
     0.455
Rcas_0052
KEGG: rrs:RoseRS_3314 hypothetical protein.
  
     0.430
Rcas_0227
KEGG: rrs:RoseRS_0610 hypothetical protein.
       0.426
Rcas_0345
KEGG: rrs:RoseRS_0106 hypothetical protein.
  
     0.416
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.