STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0304KEGG: rrs:RoseRS_0708 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase. (260 aa)    
Predicted Functional Partners:
Rcas_0308
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: rrs:RoseRS_0712 FeS assembly protein SufB.
 
 0.999
Rcas_0305
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: rrs:RoseRS_0709 FeS assembly protein SufD.
 
 0.997
Rcas_0306
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 0.994
Rcas_1182
PFAM: SufBD protein; KEGG: rrs:RoseRS_0811 SufBD protein.
 
 
 0.947
Rcas_0307
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: rrs:RoseRS_0711 SUF system FeS assembly protein, NifU family.
  
  
 0.922
Rcas_2971
KEGG: rrs:RoseRS_3113 cysteine desulfurase family protein; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V.
  
 0.915
Rcas_3584
PFAM: aminotransferase class V; KEGG: rrs:RoseRS_1377 aminotransferase, class V.
 
  
 0.844
Rcas_0314
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: rrs:RoseRS_0719 nitrogen-fixing NifU domain protein.
  
  
 0.826
Rcas_1571
PFAM: protein of unknown function DUF59; KEGG: rrs:RoseRS_0929 protein of unknown function DUF59.
 
  
 0.809
Rcas_0303
Transcriptional regulator, TrmB; PFAM: regulatory protein MarR; regulatory protein DeoR; regulatory protein ArsR; transcriptional regulator TrmB; KEGG: rrs:RoseRS_0707 transcriptional regulator, TrmB.
  
    0.666
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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