Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rcas_0331KEGG: rrs:RoseRS_0740 hypothetical protein. (476 aa)    
Predicted Functional Partners:
Rcas_0733
PFAM: O-antigen polymerase; KEGG: rrs:RoseRS_4391 O-antigen polymerase.
 
     0.779
Rcas_0707
KEGG: rrs:RoseRS_4351 hypothetical protein.
  
     0.767
Rcas_2921
KEGG: rrs:RoseRS_3193 hypothetical protein.
  
     0.766
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
       0.757
Rcas_2151
KEGG: rrs:RoseRS_3024 hypothetical protein.
  
     0.754
Rcas_0937
PFAM: peptidase C60 sortase A and B; KEGG: rrs:RoseRS_4282 peptidase C60, sortase A and B.
  
     0.748
Rcas_2722
PFAM: O-antigen polymerase; KEGG: rrs:RoseRS_2653 O-antigen polymerase.
 
     0.745
Rcas_3314
KEGG: rrs:RoseRS_3885 hypothetical protein.
 
   
 0.744
Rcas_1853
KEGG: rrs:RoseRS_2563 hypothetical protein.
  
     0.743
Rcas_2025
TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein MerR; KEGG: rrs:RoseRS_1745 DNA binding domain, excisionase family.
  
     0.738
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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