STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0352Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_0113 integral membrane sensor signal transduction histidine kinase. (383 aa)    
Predicted Functional Partners:
Rcas_4445
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rrs:RoseRS_0761 two component transcriptional regulator, winged helix family.
   0.968
Rcas_3134
PFAM: response regulator receiver; KEGG: rrs:RoseRS_2347 response regulator receiver protein.
   0.950
Rcas_2487
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rrs:RoseRS_2290 two component transcriptional regulator, winged helix family.
   0.942
Rcas_1113
KEGG: rrs:RoseRS_3771 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
0.915
Rcas_0867
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rrs:RoseRS_4489 periplasmic binding protein/LacI transcriptional regulator.
 
 
    0.900
Rcas_0353
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rrs:RoseRS_0114 two component transcriptional regulator, winged helix family.
   0.898
Rcas_4344
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rrs:RoseRS_0195 two component transcriptional regulator, winged helix family.
   0.888
Rcas_0298
PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: rrs:RoseRS_0702 response regulator receiver modulated metal dependent phosphohydrolase.
 
 
 0.886
Rcas_3221
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: rrs:RoseRS_3924 response regulator receiver modulated diguanylate cyclase.
   
 0.882
Rcas_1504
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rrs:RoseRS_3737 two component transcriptional regulator, winged helix family.
   0.870
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.