STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0384PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4598 binding-protein-dependent transport systems inner membrane component. (319 aa)    
Predicted Functional Partners:
Rcas_0385
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4597 binding-protein-dependent transport systems inner membrane component.
  
 0.958
Rcas_0383
PFAM: extracellular solute-binding protein family 5; KEGG: rrs:RoseRS_4599 extracellular solute-binding protein, family 5.
 
 
 0.933
Rcas_3840
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: chy:CHY_1130 oligopeptide/dipeptide ABC transporter, permease protein.
  
 0.883
Rcas_3842
PFAM: extracellular solute-binding protein family 5; KEGG: fnu:FN0396 dipeptide-binding protein.
 
 0.874
Rcas_3845
PFAM: extracellular solute-binding protein family 5; KEGG: xac:XAC0856 ABC transporter oligopeptide binding protein.
 
 0.871
Rcas_2802
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_1095 binding-protein-dependent transport systems inner membrane component.
  
 0.863
Rcas_3847
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0398 dipeptide transport system permease protein dppC.
  
 0.863
Rcas_1578
PFAM: extracellular solute-binding protein family 5; KEGG: rrs:RoseRS_0937 extracellular solute-binding protein, family 5.
 
 0.832
Rcas_2112
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_3048 binding-protein-dependent transport systems inner membrane component.
  
 0.820
Rcas_2422
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_2810 binding-protein-dependent transport systems inner membrane component.
  
 0.808
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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