STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0396KEGG: rrs:RoseRS_3546 hypothetical protein. (223 aa)    
Predicted Functional Partners:
Rcas_4347
PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rrs:RoseRS_0192 transcriptional coactivator/pterin dehydratase.
     
  0.900
Rcas_3964
KEGG: rrs:RoseRS_1124 LamG domain protein jellyroll fold domain protein.
  
     0.580
Rcas_3963
KEGG: rrs:RoseRS_1123 LamG domain protein jellyroll fold domain protein.
  
     0.564
Rcas_4220
PFAM: aminoglycoside phosphotransferase; KEGG: sma:SAV5110 putative phosphotransferase.
  
     0.547
Rcas_0152
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rrs:RoseRS_0480 glyoxalase/bleomycin resistance protein/dioxygenase.
  
  
 0.542
Rcas_1303
PFAM: luciferase family protein; KEGG: rxy:Rxyl_0211 luciferase-like protein.
  
   
 0.528
Rcas_2516
KEGG: rrs:RoseRS_1828 glycogen debranching enzyme-like protein.
  
     0.515
Rcas_1231
PFAM: Acetyl xylan esterase; KEGG: rrs:RoseRS_0796 acetyl xylan esterase.
 
     0.514
Rcas_0395
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rrs:RoseRS_0136 xylose isomerase domain protein TIM barrel.
       0.508
Rcas_3962
KEGG: rrs:RoseRS_1122 laminin G.
 
     0.491
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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