STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0422PFAM: response regulator receiver; KEGG: rrs:RoseRS_4620 response regulator receiver protein. (444 aa)    
Predicted Functional Partners:
Rcas_1681
PFAM: type II secretion system protein; KEGG: rrs:RoseRS_1275 type II secretion system protein.
 
  
 0.929
Rcas_4156
PFAM: type II secretion system protein; KEGG: rrs:RoseRS_3351 type II secretion system protein.
 
  
 0.929
Rcas_1711
PFAM: type II secretion system protein; KEGG: drm:Dred_2117 type II secretion system protein.
 
  
 0.927
Rcas_1680
PFAM: type II secretion system protein; KEGG: rrs:RoseRS_1276 type II secretion system protein.
 
  
 0.896
Rcas_4157
PFAM: type II secretion system protein; KEGG: rrs:RoseRS_3350 type II secretion system protein.
 
  
 0.896
Rcas_1113
KEGG: rrs:RoseRS_3771 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.880
Rcas_4159
PFAM: TadE family protein; KEGG: rrs:RoseRS_3348 TadE family protein.
 
  
 0.859
Rcas_1682
PFAM: type II secretion system protein E; KEGG: rrs:RoseRS_1274 type II secretion system protein E.
  
 0.850
Rcas_3241
PFAM: type II secretion system protein E; KEGG: rrs:RoseRS_1876 type II secretion system protein E.
  
 0.847
Rcas_4155
PFAM: type II secretion system protein E; KEGG: rrs:RoseRS_3352 type II secretion system protein E.
  
 0.847
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.