STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0461PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_4232 glycosyl transferase, group 1. (390 aa)    
Predicted Functional Partners:
Rcas_0218
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_0683 glycosyl transferase, group 1.
 
     0.815
Rcas_0462
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_4233 glycosyl transferase, group 1.
 
     0.793
Rcas_0464
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2150 glycosyl transferase, group 1.
 
    
0.785
Rcas_0465
PFAM: O-antigen polymerase; KEGG: rrs:RoseRS_4235 O-antigen polymerase.
 
    0.785
Rcas_0463
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_4607 glycosyl transferase, family 2.
  
    0.773
Rcas_1839
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2548 glycosyl transferase, group 1.
  
     0.759
Rcas_2752
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2510 glycosyl transferase, group 1.
  
     0.744
Rcas_3665
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_4045 glycosyl transferase, group 1.
  
     0.732
Rcas_0466
PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: rrs:RoseRS_4236 glycosyl hydrolase, BNR repeat-containing protein.
       0.731
Rcas_2472
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2841 glycosyl transferase, group 1.
  
     0.719
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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