STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0478PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_4248 extracellular solute-binding protein, family 1. (459 aa)    
Predicted Functional Partners:
Rcas_0479
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4249 binding-protein-dependent transport systems inner membrane component.
 
 
 0.729
Rcas_2119
PFAM: extracellular solute-binding protein family 1; KEGG: rxy:Rxyl_3005 extracellular solute-binding protein, family 1.
  
     0.691
Rcas_1278
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_0525 ABC transporter related.
  
 
 0.679
Rcas_0480
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4250 binding-protein-dependent transport systems inner membrane component.
  
 
 0.677
Rcas_0516
PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_3619 extracellular solute-binding protein, family 1.
  
     0.677
Rcas_0274
PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_0263 extracellular solute-binding protein, family 1.
  
     0.670
Rcas_3152
PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_2315 extracellular solute-binding protein, family 1.
  
     0.662
Rcas_1173
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_0802 binding-protein-dependent transport systems inner membrane component.
 
 
 0.640
Rcas_1172
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_0801 binding-protein-dependent transport systems inner membrane component.
 
 
 0.606
Rcas_2545
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_2819 binding-protein-dependent transport systems inner membrane component.
 
 
 0.597
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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