Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rcas_0484Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rrs:RoseRS_3654 polysaccharide biosynthesis protein CapD. (648 aa)    
Predicted Functional Partners:
Rcas_0486
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rrs:RoseRS_3652 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.848
Rcas_0485
PFAM: protein of unknown function DUF218; KEGG: rrs:RoseRS_3653 protein of unknown function DUF218.
       0.752
Rcas_0487
KEGG: rrs:RoseRS_3651 hypothetical protein.
 
     0.712
Rcas_0501
PFAM: lipopolysaccharide biosynthesis protein; KEGG: rrs:RoseRS_3637 lipopolysaccharide biosynthesis protein.
 
  
 0.702
Rcas_0494
PFAM: sugar transferase; KEGG: rrs:RoseRS_3644 undecaprenyl-phosphate galactose phosphotransferase.
  
 0.681
Rcas_1353
Non-specific protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein; KEGG: rrs:RoseRS_4270 non-specific protein-tyrosine kinase.
 
  
 0.637
Rcas_3636
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_4073 glycosyl transferase, family 2.
  
  
 0.634
Rcas_0498
PFAM: polysaccharide biosynthesis protein; KEGG: rrs:RoseRS_3640 polysaccharide biosynthesis protein.
 
  
 0.611
Rcas_1345
PFAM: sugar transferase; KEGG: rrs:RoseRS_4262 undecaprenyl-phosphate galactose phosphotransferase.
  
 0.593
Rcas_0449
PFAM: lipopolysaccharide biosynthesis protein; KEGG: rrs:RoseRS_4219 lipopolysaccharide biosynthesis protein.
  
  
 0.589
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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