STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0532Tetratricopeptide TPR_4; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0659 tetratricopeptide TPR_2 repeat protein. (2679 aa)    
Predicted Functional Partners:
Rcas_0179
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rrs:RoseRS_0088 amine oxidase.
 
    0.859
Rcas_0293
PFAM: NHL repeat containing protein; KEGG: rrs:RoseRS_0242 NHL repeat containing protein.
 
     0.802
Rcas_0292
PFAM: glycosyl transferase family 39; KEGG: rrs:RoseRS_0243 glycosyl transferase, family 39.
 
     0.792
Rcas_2656
KEGG: rrs:RoseRS_1507 hypothetical protein.
  
     0.771
Rcas_1668
PFAM: protein of unknown function DUF95 transmembrane; ABC-2 type transporter; KEGG: rrs:RoseRS_1285 protein of unknown function DUF95, transmembrane.
  
    0.769
Rcas_1641
PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein.
  
    0.768
Rcas_0032
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0774 TPR repeat-containing protein.
 
   
 0.758
Rcas_3987
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_1146 tetratricopeptide TPR_2 repeat protein.
 
   
 0.748
Rcas_0178
PFAM: conserved hypothetical protein; KEGG: rrs:RoseRS_0089 conserved hypothetical protein 374.
 
    0.747
Rcas_0345
KEGG: rrs:RoseRS_0106 hypothetical protein.
  
     0.746
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.