STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0605PFAM: protein of unknown function DUF322; KEGG: chy:CHY_1997 hypothetical protein. (119 aa)    
Predicted Functional Partners:
Rcas_0604
PFAM: Dak phosphatase; KEGG: rrs:RoseRS_3521 Dak phosphatase.
 
  
 0.908
Rcas_0602
TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: rrs:RoseRS_3519 DegV family protein.
 
    0.727
Rcas_0603
TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: rrs:RoseRS_3520 DegV family protein.
 
    0.723
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
       0.684
Rcas_0606
PFAM: ribosomal protein L28; KEGG: rrs:RoseRS_3523 ribosomal protein L28.
       0.579
Rcas_0600
Hypothetical protein; KEGG: rrs:RoseRS_3517 DNA polymerase, beta domain protein region.
       0.432
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.