STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0613PFAM: SCP-like extracellular; KEGG: rrs:RoseRS_3504 allergen V5/TPX-1 family protein. (329 aa)    
Predicted Functional Partners:
Rcas_2401
TIGRFAM: polymorphic outer membrane protein; SMART: Parallel beta-helix repeat; KEGG: rba:RB4375 probable extracellular nuclease.
  
  
 0.795
Rcas_2874
TIGRFAM: polymorphic outer membrane protein; PFAM: Polymorphic membrane protein Chlamydia; KEGG: rba:RB1661 hypothetical protein.
  
  
 0.689
Rcas_0223
FHA domain containing protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Forkhead-associated protein; KEGG: rrs:RoseRS_0678 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
  
  
 0.585
Rcas_2675
PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_3011 von Willebrand factor, type A.
  
 
 0.550
Rcas_2743
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_2675 hypothetical protein.
  
  
 0.518
Rcas_0244
KEGG: rrs:RoseRS_0314 hypothetical protein.
  
 0.513
Rcas_2253
Adenylate/guanylate cyclase with GAF sensor and FHA domain; PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; KEGG: rrs:RoseRS_1638 putative adenylate/guanylate cyclase.
  
  
 0.492
Rcas_0592
KEGG: rrs:RoseRS_4160 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.476
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.472
Rcas_3609
PFAM: Forkhead-associated protein; ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: rrs:RoseRS_3935 FHA modulated ABC efflux pump with fused ATPase and integral membrane subunits.
  
 0.465
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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