STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0679KEGG: rrs:RoseRS_0098 hypothetical protein. (625 aa)    
Predicted Functional Partners:
Rcas_1362
Conserved hypothetical protein; KEGG: aor:AO090103000466 predicted protein Pfam: Cytadhesin_P30 DUF1407 Collagen PROSITE: ASN_RICH GLY_RICH PRO_RICH SER_RICH THR_RICH.
  
     0.659
Rcas_1728
TIGRFAM: conserved repeat domain; KEGG: rrs:RoseRS_1002 conserved repeat domain.
  
     0.650
Rcas_1393
KEGG: rrs:RoseRS_2213 hypothetical protein.
  
   
 0.579
Rcas_0063
PFAM: Peptidoglycan-binding LysM; KEGG: rrs:RoseRS_4013 peptidoglycan-binding LysM.
  
    0.578
Rcas_0678
PFAM: ROK family protein; KEGG: rrs:RoseRS_0099 ROK family protein.
  
    0.559
Rcas_0533
KEGG: rrs:RoseRS_0658 hypothetical protein.
  
     0.500
Rcas_0680
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rrs:RoseRS_0097 thioredoxin reductase.
       0.500
Rcas_3116
KEGG: rrs:RoseRS_2363 hypothetical protein.
  
     0.500
Rcas_3944
PFAM: Dual specificity protein phosphatase; KEGG: rrs:RoseRS_1106 dual specificity protein phosphatase.
  
     0.494
Rcas_3630
PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: rrs:RoseRS_3956 SH3, type 3 domain protein.
  
     0.492
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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