STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0802PFAM: 4-vinyl reductase 4VR; KEGG: rrs:RoseRS_4449 4-vinyl reductase, 4VR. (215 aa)    
Predicted Functional Partners:
Rcas_0454
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rrs:RoseRS_4225 radical SAM domain protein.
  
  
 0.598
Rcas_0832
KEGG: rrs:RoseRS_4481 hypothetical protein.
  
  
 0.598
Rcas_1584
KEGG: rrs:RoseRS_0942 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
  
 0.598
Rcas_2450
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: deh:cbdb_A1620 radical SAM/B12 binding domain protein.
  
  
 0.598
Rcas_3579
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rrs:RoseRS_1372 radical SAM domain protein.
  
  
 0.598
Rcas_2256
PFAM: protein of unknown function DUF344; KEGG: rrs:RoseRS_1635 protein of unknown function DUF344.
   
    0.503
Rcas_2786
PFAM: protein of unknown function DUF344; KEGG: rrs:RoseRS_1080 protein of unknown function DUF344.
   
    0.503
Rcas_3312
PFAM: peptidase M19 renal dipeptidase; KEGG: rrs:RoseRS_3883 membrane dipeptidase.
  
  
 0.463
Rcas_0803
N-acetylglucosamine-1-phosphate uridyltransferase-like protein; KEGG: rrs:RoseRS_4450 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains)-like protein.
       0.431
Rcas_0805
KEGG: rrs:RoseRS_4452 multi-sensor signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
    0.427
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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