STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0803N-acetylglucosamine-1-phosphate uridyltransferase-like protein; KEGG: rrs:RoseRS_4450 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains)-like protein. (466 aa)    
Predicted Functional Partners:
Rcas_0804
PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: rrs:RoseRS_4451 response regulator receiver modulated diguanylate cyclase.
 
     0.912
Rcas_0805
KEGG: rrs:RoseRS_4452 multi-sensor signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
     0.899
Rcas_3987
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_1146 tetratricopeptide TPR_2 repeat protein.
 
     0.772
Rcas_2219
Putative FHA domain containing protein; KEGG: rrs:RoseRS_2441 hypothetical protein.
  
     0.767
Rcas_0962
KEGG: rrs:RoseRS_3483 hypothetical protein.
  
     0.758
Rcas_1641
PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein.
 
     0.756
Rcas_1245
PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: rrs:RoseRS_0781 PBS lyase heat domain protein repeat-containing protein.
 
     0.751
Rcas_3008
KEGG: rrs:RoseRS_2034 hypothetical protein.
  
     0.749
Rcas_2921
KEGG: rrs:RoseRS_3193 hypothetical protein.
  
     0.746
Rcas_2726
PFAM: Tetratricopeptide TPR_4; KEGG: rrs:RoseRS_2658 glycosyl transferase, family 39.
  
     0.740
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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