STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0807PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rrs:RoseRS_4454 alcohol dehydrogenase GroES domain protein. (346 aa)    
Predicted Functional Partners:
xylA
KEGG: rrs:RoseRS_2884 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
     
 0.914
Rcas_4404
PFAM: PfkB domain protein; KEGG: rrs:RoseRS_3455 PfkB domain protein.
  
 
 0.908
Rcas_3747
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rrs:RoseRS_3261 alcohol dehydrogenase, zinc-binding domain protein.
  
     0.715
Rcas_4052
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rrs:RoseRS_1213 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
     
 0.498
Rcas_0805
KEGG: rrs:RoseRS_4452 multi-sensor signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
  
 0.487
Rcas_4434
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rrs:RoseRS_0752 alcohol dehydrogenase GroES domain protein.
 
 
0.461
Rcas_0806
PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_4453 alpha/beta hydrolase fold.
  
  
 0.457
Rcas_0803
N-acetylglucosamine-1-phosphate uridyltransferase-like protein; KEGG: rrs:RoseRS_4450 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains)-like protein.
  
    0.454
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: rrs:RoseRS_2886 xylulokinase.
  
 0.443
Rcas_1866
PFAM: carbohydrate kinase FGGY; KEGG: rrs:RoseRS_2596 carbohydrate kinase, FGGY.
 
  
 0.428
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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