STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0819KEGG: rrs:RoseRS_4467 hypothetical protein. (76 aa)    
Predicted Functional Partners:
Rcas_0820
PFAM: iron permease FTR1; KEGG: rrs:RoseRS_4468 iron permease FTR1.
       0.768
Rcas_0818
KEGG: rrs:RoseRS_4466 hypothetical protein.
       0.757
Rcas_0821
KEGG: rrs:RoseRS_4469 hypothetical protein.
       0.746
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
       0.448
Rcas_0815
KEGG: rrs:RoseRS_4463 hypothetical protein.
       0.445
Rcas_0816
PFAM: Cupin 2 conserved barrel domain protein; KEGG: rrs:RoseRS_4464 hypothetical protein.
       0.445
Rcas_0817
PFAM: Methyltransferase type 11; KEGG: rrs:RoseRS_4465 methyltransferase type 11.
       0.445
Rcas_0814
PFAM: UbiA prenyltransferase; KEGG: rrs:RoseRS_4462 hypothetical protein.
       0.430
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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