STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0878PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_4516 alpha/beta hydrolase fold. (317 aa)    
Predicted Functional Partners:
Rcas_0413
PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_4611 alpha/beta hydrolase fold.
  
     0.769
Rcas_2519
PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: rrs:RoseRS_1825 alpha/beta hydrolase fold.
  
     0.767
Rcas_1764
PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_2105 alpha/beta hydrolase fold.
  
     0.762
Rcas_3377
PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_2225 alpha/beta hydrolase fold.
  
     0.761
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
     
 0.746
Rcas_2440
PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_2857 alpha/beta hydrolase fold.
  
     0.740
Rcas_0876
Hypothetical protein.
       0.731
Rcas_2533
PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_1813 alpha/beta hydrolase fold.
  
     0.704
Rcas_1001
PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_3822 alpha/beta hydrolase fold.
  
     0.536
Rcas_0875
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rrs:RoseRS_4513 DNA methylase N-4/N-6 domain protein; Belongs to the N(4)/N(6)-methyltransferase family.
       0.457
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.