STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0919PFAM: glycoside hydrolase family 3 domain protein; PA14 domain protein; SMART: PA14-related domain protein; KEGG: rrs:RoseRS_3480 glycoside hydrolase, family 3 domain protein; Belongs to the glycosyl hydrolase 3 family. (914 aa)    
Predicted Functional Partners:
Rcas_0182
PFAM: glycoside hydrolase family 5; KEGG: aba:Acid345_1689 glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 0.941
Rcas_0521
Beta-glucosidase; PFAM: glycoside hydrolase family 1; KEGG: rrs:RoseRS_3614 beta-glucosidase.
    
 0.913
Rcas_1932
PFAM: glycoside hydrolase family 1; KEGG: rrs:RoseRS_2967 glycoside hydrolase, family 1; Belongs to the glycosyl hydrolase 1 family.
    
 0.913
Rcas_3863
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rrs:RoseRS_1931 alpha amylase, catalytic region.
   
 
 0.911
Rcas_4167
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rrs:RoseRS_3310 alpha amylase, catalytic region.
   
 
 0.911
Rcas_1385
PFAM: glycoside hydrolase family 4; KEGG: rrs:RoseRS_4113 glycoside hydrolase, family 4.
     
 0.902
Rcas_1874
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: rrs:RoseRS_2735 alpha-L-rhamnosidase.
   
 0.762
Rcas_2644
Beta-mannosidase; PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 sugar binding; KEGG: rrs:RoseRS_1576 beta-mannosidase.
 
   
 0.743
Rcas_0598
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: rrs:RoseRS_3514 alpha-N-arabinofuranosidase.
 
   
 0.741
Rcas_2021
PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: rrs:RoseRS_1740 glycoside hydrolase family 2, sugar binding.
 
   
 0.632
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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