STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0997Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rrs:RoseRS_3818 two component transcriptional regulator, winged helix family. (230 aa)    
Predicted Functional Partners:
Rcas_1113
KEGG: rrs:RoseRS_3771 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 0.972
Rcas_0996
KEGG: rrs:RoseRS_3817 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
   0.940
Rcas_0155
Multi-sensor signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: rrs:RoseRS_0484 multi-sensor signal transduction histidine kinase.
 
 
 0.918
Rcas_3135
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_2344 PAS/PAC sensor signal transduction histidine kinase.
 
 
0.883
Rcas_3420
KEGG: rrs:RoseRS_1618 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 0.853
Rcas_3032
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_2057 integral membrane sensor signal transduction histidine kinase.
   0.842
Rcas_0230
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_0613 integral membrane sensor signal transduction histidine kinase.
   0.833
Rcas_2598
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mta:Moth_1477 periplasmic sensor signal transduction histidine kinase.
   0.828
Rcas_0352
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_0113 integral membrane sensor signal transduction histidine kinase.
   0.824
Rcas_2665
KEGG: rrs:RoseRS_3059 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
 0.821
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.