Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1007PFAM: YcfA family protein. (70 aa)    
Predicted Functional Partners:
Rcas_1008
PFAM: protein of unknown function UPF0150; KEGG: rrs:RoseRS_1435 protein of unknown function UPF0150.
   
 
 0.945
Rcas_2869
KEGG: cph:Cpha266_1139 hypothetical protein.
   
 
 0.771
Rcas_2885
Protein of unknown function UPF0150; PFAM: CopG domain protein DNA-binding domain protein; protein of unknown function UPF0150; KEGG: lpf:plpl0034 hypothetical protein.
   
 
 0.771
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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