Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1027KEGG: rrs:RoseRS_0399 hypothetical protein. (464 aa)    
Predicted Functional Partners:
Rcas_3520
KEGG: rrs:RoseRS_2152 hypothetical protein.
 
   
 0.710
Rcas_3882
KEGG: rrs:RoseRS_0857 hypothetical protein.
 
   
 0.646
Rcas_3344
KEGG: rrs:RoseRS_3991 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.633
Rcas_0555
PFAM: Laminin G sub domain 2; SMART: LamG domain protein jellyroll fold domain protein; KEGG: rrs:RoseRS_3863 laminin G, sub domain 2.
 
 
 0.565
Rcas_0699
PFAM: transcriptional activator domain; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_4345 transcriptional activator domain.
 
     0.565
Rcas_1030
PFAM: sugar transferase; KEGG: rrs:RoseRS_0402 sugar transferase.
       0.558
Rcas_3535
KEGG: rrs:RoseRS_3712 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.558
Rcas_0918
PFAM: YceI family protein; KEGG: rrs:RoseRS_3479 YceI family protein; Belongs to the UPF0312 family.
  
   
 0.552
Rcas_2277
PFAM: peptidase C11 clostripain; KEGG: rrs:RoseRS_1520 FHA domain containing protein.
  
     0.548
Rcas_3670
KEGG: rrs:RoseRS_4040 hypothetical protein.
 
   
 0.515
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.