Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rcas_1069PFAM: Peptidoglycan-binding LysM; KEGG: rrs:RoseRS_0425 peptidoglycan-binding LysM. (168 aa)    
Predicted Functional Partners:
Rcas_3209
KEGG: rrs:RoseRS_3908 hypothetical protein.
   
 
 0.873
Rcas_0112
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_4565 stage II sporulation E family protein.
  
     0.610
Rcas_2690
PFAM: Lytic transglycosylase catalytic; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_2641 lytic transglycosylase, catalytic.
 
  
 0.441
Rcas_3344
KEGG: rrs:RoseRS_3991 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.417
Rcas_1439
KEGG: rrs:RoseRS_1037 hypothetical protein.
  
     0.411
Rcas_3670
KEGG: rrs:RoseRS_4040 hypothetical protein.
  
     0.400
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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