STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1078PFAM: histone deacetylase superfamily; KEGG: rrs:RoseRS_3805 histone deacetylase superfamily. (346 aa)    
Predicted Functional Partners:
Rcas_3207
PFAM: WD-40 repeat protein; KEGG: rrs:RoseRS_3910 WD-40 repeat protein.
   
 0.845
tdk
PFAM: thymidine kinase; KEGG: rrs:RoseRS_3804 thymidine kinase.
       0.773
Rcas_1609
PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: rrs:RoseRS_0240 helicase domain protein.
    
 0.765
Rcas_3328
KEGG: rrs:RoseRS_3980 non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases.
    
 0.765
Rcas_2830
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_1651 AAA ATPase, central domain protein.
   
 0.761
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
   
 0.744
Rcas_1864
PFAM: amine oxidase; KEGG: rrs:RoseRS_2594 amine oxidase.
   
 0.719
Rcas_1963
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rrs:RoseRS_2925 amine oxidase.
   
 0.719
Rcas_2074
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mva:Mvan_4388 amine oxidase.
   
 0.719
Rcas_3489
PFAM: WD-40 repeat protein; SMART: serine/threonine protein kinase; KEGG: rrs:RoseRS_2154 WD-40 repeat protein.
    
 0.648
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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