STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1209PFAM: aminotransferase class I and II; KEGG: rrs:RoseRS_4133 aminotransferase, class I and II. (395 aa)    
Predicted Functional Partners:
Rcas_0843
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rrs:RoseRS_0340 (2Fe-2S)-binding domain protein.
 
      0.752
Rcas_1210
PFAM: Monogalactosyldiacylglycerol synthase; KEGG: rrs:RoseRS_4132 monogalactosyldiacylglycerol synthase.
     
 0.556
Rcas_1903
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rrs:RoseRS_2985 glutamate synthase (ferredoxin).
  
  
 0.553
Rcas_4052
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rrs:RoseRS_1213 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
  
 0.532
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 0.505
Rcas_2930
PFAM: AMP-dependent synthetase and ligase; Enoyl-CoA hydratase/isomerase; Alcohol dehydrogenase GroES domain protein; KEGG: rrs:RoseRS_3202 AMP-dependent synthetase and ligase.
  
 
 0.491
Rcas_0317
PFAM: thiamineS protein; KEGG: rrs:RoseRS_0722 thiamineS protein.
  
 
 0.464
Rcas_3315
PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: rrs:RoseRS_3886 phosphate butyryltransferase.
  
 
 0.464
Rcas_0318
PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: rrs:RoseRS_0723 UBA/ThiF-type NAD/FAD binding protein.
 
 
 0.423
Rcas_3102
KEGG: rrs:RoseRS_2376 hypothetical protein.
 
   
 0.421
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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