STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1216PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: rrs:RoseRS_4126 glycerophosphodiester phosphodiesterase. (237 aa)    
Predicted Functional Partners:
Rcas_4111
PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rrs:RoseRS_3299 FAD dependent oxidoreductase.
 
 0.838
Rcas_4112
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: rrs:RoseRS_3300 glycerol-3-phosphate dehydrogenase.
 
 
  0.735
Rcas_2043
TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: rrs:RoseRS_1765 MIP family channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.719
Rcas_1217
PFAM: zinc finger SWIM domain protein; KEGG: rrs:RoseRS_4125 zinc finger, SWIM domain protein.
       0.599
Rcas_0244
KEGG: rrs:RoseRS_0314 hypothetical protein.
     
 0.503
Rcas_0587
TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4155 phosphate ABC transporter, inner membrane subunit PstA.
  
  
 0.500
Rcas_3268
PFAM: Alkaline phosphatase; KEGG: rrs:RoseRS_1990 alkaline phosphatase.
  
  
 0.493
Rcas_1215
PFAM: NLP/P60 protein; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: rrs:RoseRS_4127 NLP/P60 protein.
     
 0.484
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
  
 0.430
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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