STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potASpermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (370 aa)    
Predicted Functional Partners:
Rcas_1236
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_0791 binding-protein-dependent transport systems inner membrane component.
 
 
 0.997
Rcas_1235
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_0792 binding-protein-dependent transport systems inner membrane component.
 
 
 0.995
Rcas_1234
KEGG: rrs:RoseRS_0793 ABC-type Fe3+ transport system periplasmic component-like protein.
 
 0.982
Rcas_2839
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_1642 binding-protein-dependent transport systems inner membrane component.
 
 0.967
Rcas_2837
PFAM: extracellular solute-binding protein family 1; KEGG: rrs:RoseRS_1645 extracellular solute-binding protein, family 1.
  
 0.941
Rcas_2177
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
 0.932
Rcas_2838
Ornithine carbamoyltransferase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_1644 ornithine carbamoyltransferase.
  
 0.914
Rcas_2358
PFAM: ABC-2 type transporter; KEGG: rrs:RoseRS_2479 ABC-2 type transporter.
 
   
  0.902
Rcas_1250
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_0494 ABC transporter related.
 
 
   
0.900
Rcas_3126
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_0494 ABC transporter related.
 
 
   
0.900
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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