STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1299PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_2189 oxidoreductase domain protein. (326 aa)    
Predicted Functional Partners:
Rcas_2255
PFAM: oxidoreductase domain protein; KEGG: rrs:RoseRS_1636 oxidoreductase domain protein.
  
     0.771
Rcas_2464
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_2849 oxidoreductase domain protein.
  
     0.771
Rcas_1260
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_0507 oxidoreductase domain protein.
  
     0.770
Rcas_2547
PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: vei:Veis_2277 oxidoreductase domain protein.
  
     0.755
Rcas_3571
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_1364 oxidoreductase domain protein.
  
     0.754
Rcas_2441
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rle:pRL90296 putative GFO/IDH/MocA oxidoreductase protein.
  
     0.746
Rcas_0518
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_3617 oxidoreductase domain protein.
 
     0.744
Rcas_4405
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: rrs:RoseRS_3454 oxidoreductase domain protein.
  
     0.699
Rcas_2755
Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_2513 oxidoreductase domain protein.
  
     0.693
Rcas_3975
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_1135 oxidoreductase domain protein.
  
     0.677
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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