STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1399PFAM: peptidase M23B; KEGG: rrs:RoseRS_2207 hypothetical protein. (945 aa)    
Predicted Functional Partners:
Rcas_1400
KEGG: rrs:RoseRS_2206 hypothetical protein.
       0.773
Rcas_1401
KEGG: rrs:RoseRS_2205 hypothetical protein.
       0.642
Rcas_1402
KEGG: rrs:RoseRS_2204 hypothetical protein.
       0.613
Rcas_1398
KEGG: rrs:RoseRS_2208 hypothetical protein.
       0.601
Rcas_1395
KEGG: rrs:RoseRS_2211 type IV secretory pathway VirB4 components-like protein.
       0.591
Rcas_1403
KEGG: rrs:RoseRS_2203 hypothetical protein.
       0.568
Rcas_1393
KEGG: rrs:RoseRS_2213 hypothetical protein.
       0.564
Rcas_1394
KEGG: rrs:RoseRS_2212 hypothetical protein.
       0.564
Rcas_1396
KEGG: rrs:RoseRS_2210 hypothetical protein.
       0.564
Rcas_1397
KEGG: rrs:RoseRS_2209 hypothetical protein.
       0.564
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.