STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1405KEGG: rrs:RoseRS_2201 ATPase involved in chromosome partitioning-like protein. (416 aa)    
Predicted Functional Partners:
Rcas_3209
KEGG: rrs:RoseRS_3908 hypothetical protein.
 
   
 0.782
Rcas_3865
KEGG: rrs:RoseRS_4300 hypothetical protein.
  
     0.764
Rcas_4414
KEGG: rrs:RoseRS_3443 metallophosphoesterase.
 
     0.755
Rcas_0565
PFAM: band 7 protein; KEGG: rrs:RoseRS_3855 band 7 protein.
  
     0.754
Rcas_2584
KEGG: rrs:RoseRS_2803 chromosome segregation ATPase-like protein.
  
     0.746
Rcas_2543
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: rrs:RoseRS_2821 ParB-like partition protein; Belongs to the ParB family.
 
 
 0.739
Rcas_3664
KEGG: rrs:RoseRS_4046 hypothetical protein.
  
     0.732
Rcas_0175
KEGG: rrs:RoseRS_4582 hypothetical protein.
  
     0.718
Rcas_2921
KEGG: rrs:RoseRS_3193 hypothetical protein.
 
  
 0.717
Rcas_0832
KEGG: rrs:RoseRS_4481 hypothetical protein.
 
     0.715
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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