STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1409PFAM: TadE family protein; KEGG: rrs:RoseRS_2197 TadE family protein. (217 aa)    
Predicted Functional Partners:
Rcas_1407
PFAM: SAF domain protein; KEGG: rrs:RoseRS_2199 SAF domain.
  
  
 0.787
Rcas_1408
KEGG: rrs:RoseRS_2198 hypothetical protein.
       0.741
Rcas_1406
PFAM: type II secretion system protein E; KEGG: rrs:RoseRS_2200 type II secretion system protein E.
  
    0.665
Rcas_1410
TIGRFAM: conserved repeat domain; KEGG: rrs:RoseRS_2196 conserved repeat domain.
       0.625
Rcas_1684
PFAM: SAF domain protein; KEGG: rrs:RoseRS_1272 SAF domain.
  
  
 0.524
Rcas_4153
PFAM: SAF domain protein; KEGG: rrs:RoseRS_3354 SAF domain.
  
  
 0.524
Rcas_1411
KEGG: rrs:RoseRS_2194 hypothetical protein.
       0.518
Rcas_0422
PFAM: response regulator receiver; KEGG: rrs:RoseRS_4620 response regulator receiver protein.
  
  
 0.494
Rcas_4154
PFAM: response regulator receiver; KEGG: rrs:RoseRS_3353 response regulator receiver protein.
  
  
 0.494
Rcas_1404
PFAM: type II secretion system protein E; KEGG: rrs:RoseRS_2202 type II secretion system protein E.
  
    0.485
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.