STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1441PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_0728 protein of unknown function DUF820. (339 aa)    
Predicted Functional Partners:
Rcas_2574
SMART: LamG domain protein jellyroll fold domain protein; KEGG: ana:alr7304 similar to hlyA.
  
     0.774
Rcas_2246
Hypothetical protein; KEGG: aav:Aave_2156 polymorphic outer membrane protein.
  
     0.772
Rcas_0555
PFAM: Laminin G sub domain 2; SMART: LamG domain protein jellyroll fold domain protein; KEGG: rrs:RoseRS_3863 laminin G, sub domain 2.
  
     0.769
Rcas_3210
KEGG: rrs:RoseRS_3907 hypothetical protein.
  
     0.768
Rcas_1115
KEGG: rrs:RoseRS_3769 hypothetical protein.
  
     0.759
Rcas_2195
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_1069 protein of unknown function DUF820.
  
     0.759
Rcas_1445
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: rrs:RoseRS_2175 N-acetylmuramoyl-L-alanine amidase, family 2.
  
     0.758
Rcas_2196
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_1069 protein of unknown function DUF820.
  
     0.756
Rcas_1025
KEGG: rrs:RoseRS_4328 hypothetical protein.
  
     0.742
Rcas_2950
KEGG: rrs:RoseRS_3141 hypothetical protein.
  
     0.735
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.