STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1569PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: rrs:RoseRS_0927 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family. (806 aa)    
Predicted Functional Partners:
Rcas_2274
Protease-associated PA domain protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: rrs:RoseRS_1513 protease-associated PA domain protein.
  
     0.635
Rcas_2675
PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_3011 von Willebrand factor, type A.
 
 
 0.571
Rcas_2219
Putative FHA domain containing protein; KEGG: rrs:RoseRS_2441 hypothetical protein.
  
 0.526
Rcas_1570
KEGG: rrs:RoseRS_0928 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase.
  
  
 0.521
Rcas_4361
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: rrs:RoseRS_0170 cobalt ABC transporter, inner membrane subunit CbiQ.
  
     0.493
Rcas_2774
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rrs:RoseRS_2828 endonuclease/exonuclease/phosphatase.
  
     0.470
Rcas_1571
PFAM: protein of unknown function DUF59; KEGG: rrs:RoseRS_0929 protein of unknown function DUF59.
       0.442
Rcas_0223
FHA domain containing protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Forkhead-associated protein; KEGG: rrs:RoseRS_0678 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
  
   
0.413
Rcas_4263
KEGG: rrs:RoseRS_0169 cobalt ABC transporter, ATPase subunit; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
  
    0.402
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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