STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1640KEGG: rrs:RoseRS_1313 hypothetical protein. (313 aa)    
Predicted Functional Partners:
Rcas_3558
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.850
Rcas_2051
PFAM: Disulphide bond formation protein DsbB; KEGG: rrs:RoseRS_1773 disulphide bond formation protein DsbB; Belongs to the DsbB family.
   
 
 0.820
Rcas_1465
KEGG: rrs:RoseRS_4142 hypothetical protein.
   
 
 0.807
Rcas_1466
KEGG: rrs:RoseRS_4143 hypothetical protein.
   
 
 0.807
Rcas_2363
PFAM: cytochrome c class I; KEGG: rrs:RoseRS_2484 cytochrome c, class I.
   
 
 0.807
Rcas_2631
PFAM: cytochrome c class I; KEGG: rrs:RoseRS_1498 cytochrome c, class I.
   
 
 0.807
Rcas_2780
PFAM: cytochrome c class I; KEGG: sil:SPOA0361 cytochrome c family protein.
   
 
 0.807
Rcas_3430
Hydroxylamine reductase; PFAM: cytochrome d1 heme region; KEGG: hch:HCH_04416 cytochrome c, mono- and diheme variants.
   
 
 0.807
Rcas_1574
Cytochrome c oxidase subunit II; PFAM: blue (type 1) copper domain protein; cytochrome c oxidase subunit II; KEGG: rrs:RoseRS_0933 cytochrome c oxidase, subunit II.
   
 
 0.777
Rcas_1639
KEGG: rrs:RoseRS_1314 hypothetical protein.
       0.773
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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