STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Rcas_1663PFAM: phosphatidylserine decarboxylase-related; KEGG: rrs:RoseRS_1290 phosphatidylserine decarboxylase-like protein. (225 aa)    
Predicted Functional Partners:
rpsP
PFAM: ribosomal protein S16; KEGG: rrs:RoseRS_1287 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
       0.646
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.634
Rcas_1665
KEGG: rrs:RoseRS_1288 RNA-binding protein (contains KH domain)-like protein; Belongs to the UPF0109 family.
       0.634
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
       0.576
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
  
    0.532
Rcas_0344
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rrs:RoseRS_0105 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 
 0.498
Rcas_0358
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: afu:AF1744 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (PgsA-2); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 
 0.498
Rcas_1944
TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rrs:RoseRS_2955 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 
 0.498
Rcas_3405
PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_1554 alpha/beta hydrolase fold.
 
   
 0.431
Rcas_1586
KEGG: rrs:RoseRS_0944 Zn-dependent hydrolase of the beta-lactamase fold-like protein.
   
   0.429
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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